| 5. Independent Administrative Institutions |
| |
| National Center for University Entrance Examinations |
| National Institution for Academic Degrees and University Evaluation (NIAD-UE) |
| Center for National University Finance and Management |
| National Institute for Materials Science(NIMS) |
| National Maritime Research Institute |
| Research Institute of Economy, Trade and Industry (RIETI) |
| Port and Airport Research Institute |
| National Research Institute of Brewing (NRIB) |
| National Traffic Safety and Environment Laboratory |
| Electronic Navigation Research Institute |
| Japan Aerospace Exploration Agency (JAXA) |
| National Institute of Information and Communications Technology (NICT) |
| Japan Agency for Marine-Earth Science and Technology (JAMSTEC) |
| National Hospital Organization Sendai Medical Center |
| National Hospital Organization Chiba-East-Hospital |
| National Hospital Organization Tokyo Medical Center |
| National Hospital Organization Sagamihara National Hospital |
| National Hospital Organization Kanazawa Medical Center |
| National Hospital Organization Nagoya Medical Center |
| National Hospital Organization Kyoto Medical Center |
| National Hospital Organization Osaka National Hospital |
| National Hospital Organization Osaka Minami Medical Center |
| National Hospital Organization Kure Medical Center |
| National Hospital Organization Zentsuji National Hospital |
| National Hospital Organization Kyushu Cancer Center |
| National Hospital Organization Nagasaki Medical Center |
| National Hospital Organization Hanamaki Hospital |
| National Hospital Organization Miyagi National Hospital |
| National Hospital Organization Kurihama Medical and Addiction Center |
| National Epilepsy Center,Shizuoka Institute of Epilepsy and Neurological Disorders |
| National Hospital Organization Utano Hospital |
| National Hospital Organization Kinki-Chuo Chest Medical Center |
| National Hospital Organization Minami-Okayama Medical Center |
| National Hospital Organization Yamaguchi - Ube Medical Center |
| National Hospital Organization Higashi Nagoya National Hospital |
| National Hospital Organization Kyushu Medical Center |
| National Hospital Organization Shikoku Cancer Center |
| National Institute of Biomedical Innovation |
| National Hospital Organization Kagawa children's hospital |
| National Fisheries University |
| National Hospital Organization Murayama Medical Center |
| Institute of Developing Economies, Japan External Trade Organization (IDE-JETRO) |
| National Hospital Organization Mie Central Medical Center |
| National Hospital Organization Nishitaga National Hospital |
| National Livestock Breeding Center(NLBC) |
| National Hospital Organization Hakodate National Hospital |
| National Institute for Agro-Environmental Sciences (NIAES) |
| National Research Institute for Earth Science and Disaster Prevention (NIED) |
| National Institute of Radiological Sciences (NIRS) |
| National Institute for Environmental Studies (NIES) |
| Building Research Institute (BRI) |
| Forestry and Forest Products Research Institute (FFPRI) |
| National Institute of Health and Nutrition (NIHN) |
| National Institute of Advanced Industrial Science and Technology (AIST) |
| National Institute of Agrobiological Sciences (NIAS) |
| National Women's Education Center of Japan(NWEC) |
| National Museum of Nature and Science |
| Tokyo National Museum, National Institutes for Cultural Heritage |
| Kyoto National Museum, National Institutes for Cultural Heritage |
| Nara National Museum, National Institutes for Cultural Heritage |
| Kyushu National Museum, National Institutes for Cultural Heritage |
| National Research Institute for Cultural Properties, Tokyo, National Institutes for Cultural Heritage |
| Nara National Research Institute for Cultural Properties, National Institutes for Cultural Heritage |
| The National Museum of Modern Art, Tokyo |
| The National Museum of Western Art |
| The National Museum of Modern Art, Kyoto |
| The National Museum of Art, Osaka |
| Fisheries Research Agency |
| Public Works Research Institute (PWRI) |
| National Agriculture and Food Research Organization (NARO) |
| National Institute of Special Needs Education (NISE) |
| National Institute of Occupational Safety and Health, Japan |
| RIKEN |
| Japan Atomic Energy Agency (JAEA) |
| Japan International Research Center for Agricultural Sciences |
| National Agency for the Advancement of Sports and Health |
| National Center for Global Health and Medicine |
| National Cerebral and Cardiovascular Center (NCVC) |
| National Center of Neurology and Psychiatry (NCNP) |
| National Hospital Organization Kagoshima Medical Center |
| National Center for Geriatrics and Gerontology |
| National Center for Child Health and Development |
| National Cancer Center |
| National Center for Global Health and Medicine |